Topo Brain

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Inheritance graph

Defined in file : brainvisa/toolboxes/baby/types/PipeBaby.py

Used in the following processes

Brain Detection
Brain Detection (Utrecht)
Inner Surface Initialization
Inner Surface Initialization (Utrecht)
Simplified Brain Detection (Utrecht)
Surface Deformation
Surface Deformation (Utrecht)

Associated formats

Aperio svs
BMP image
BrainVISA volume formats
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
FreesurferMGH
FreesurferMGZ
GIF image
GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
Hamamatsu ndpi
Hamamatsu vms
Hamamatsu vmu
JPEG image
Leica scn
MINC image
NIFTI-1 image
PBM image
PGM image
PNG image
PPM image
Sakura svslide
SPM image
TIFF image
TIFF(.tif) image
Ventana bif
VIDA image
XBM image
XPM image
Zeiss czi

Associated ontology rules

  • brainvisa-3.1.0 :
    • {protocol}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Ltopo_brain_<subject>
    {protocol}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Rtopo_brain_<subject>
  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Ltopo_brain_<subject>
    {center}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Rtopo_brain_<subject>

    Key attributes

  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis ,  side
  • brainvisa-3.2.0 :
    • time_duration ,  acquisition_date ,  time_point ,  rescan ,  center ,  subject ,  acquisition ,  analysis ,  side